Publications

Publications by reversed chronological order.

2024

  1. Probing RNA structural landscapes across Candida yeast genomes
    Uciel Chorostecki, Ester Saus, and Toni Gabaldón
    Frontiers in Microbiology 2024
  2. Principles of miRNA/miRNA* function in plant MIRNA processing
    Santiago Rosatti, Arantxa ML Rojas, Belén Moro, and 4 more authors
    Nucleic Acids Research 2024
  3. sincFold: end-to-end learning of short-and long-range interactions in RNA secondary structure
    Leandro A Bugnon, Leandro Di Persia, Matias Gerard, and 7 more authors
    Briefings in Bioinformatics 2024

2023

  1. A hybrid approach to assess the structural impact of long noncoding RNA mutations uncovers key NEAT1 interactions in colorectal cancer
    Efe Aydın, Ester Saus, Uciel Chorostecki, and 1 more author
    IUBMB life 2023
  2. The plant noncoding transcriptome: a versatile environmental sensor
    Uciel Chorostecki, Nicolas G Bologna, and Federico Ariel
    The EMBO Journal 2023

2022

  1. PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies
    Diego Fuentes, Manuel Molina, Uciel Chorostecki, and 3 more authors
    Nucleic Acids Research 2022
  2. Secondary structure prediction of long noncoding RNA: review and experimental comparison of existing approaches
    LA Bugnon, Alejandro A Edera, S Prochetto, and 8 more authors
    Briefings in Bioinformatics 2022

2021

  1. Structural characterization of NORAD reveals a stabilizing role of spacers and two new repeat units
    Uciel Chorostecki, Ester Saus, and Toni Gabaldón
    Computational and structural biotechnology journal 2021
  2. Profiling of RNA structure at single-nucleotide resolution using nextPARS
    Uciel Chorostecki, Jesse R Willis, Ester Saus, and 1 more author
    2021

2020

  1. MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life
    Uciel Chorostecki, Manuel Molina, Leszek P Pryszcz, and 1 more author
    Nucleic acids research 2020
  2. Identification of key sequence features required for microRNA biogenesis in plants
    Arantxa ML Rojas, Salvador I Drusin, Uciel Chorostecki, and 8 more authors
    Nature communications 2020

2019

  1. Transcriptomic analyses reveal groups of co-expressed, syntenic lncRNAs in four species of the genus Caenorhabditis
    Cinta Pegueroles, Susana Iraola-Guzmán, Uciel Chorostecki, and 3 more authors
    RNA biology 2019

2018

  1. Spatial control of gene expression by miR319-regulated TCP transcription factors in leaf development
    Edgardo G Bresso, Uciel Chorostecki, Ramiro E Rodriguez, and 2 more authors
    Plant physiology 2018
  2. Efficiency and precision of microRNA biogenesis modes in plants
    Belén Moro, Uciel Chorostecki, Siwaret Arikit, and 5 more authors
    Nucleic acids research 2018

2017

  1. Evolutionary footprints reveal insights into plant microRNA biogenesis
    Uciel Chorostecki, Belen Moro, Arantxa ML Rojas, and 4 more authors
    The Plant Cell 2017

2014

  1. comTAR: a web tool for the prediction and characterization of conserved microRNA targets in plants
    Uciel Chorostecki, and Javier F Palatnik
    Bioinformatics 2014

2013

  1. Multiple RNA recognition patterns during microRNA biogenesis in plants
    Nicolás G Bologna, Arnaldo L Schapire, Jixian Zhai, and 4 more authors
    Genome research 2013

2012

  1. Identification of new microRNA-regulated genes by conserved targeting in plant species
    Uciel Chorostecki, Valeria A Crosa, Anabella F Lodeyro, and 5 more authors
    Nucleic Acids Research 2012

2010

  1. Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor
    Julieta L Mateos, Nicolás G Bologna, Uciel Chorostecki, and 1 more author
    Current Biology 2010